lib module

render-smiles function

#let render-smiles(smiles, abbreviate: false, skeletal: false, dump: false, config: (:), annotations: none, show-indices: false)

Documentation

Parse, lay out, and render a molecule from a SMILES string.

The generated 2D coordinates are passed through the same Alchemist rendering pipeline as Molfile/SDF input.

Parameters

smiles (str): SMILES notation for one molecule.
abbreviate (bool): Fold common hydrogens and terminal groups into labels. Default: false.
skeletal (bool): Draw a skeletal formula; overrides abbreviate. Default: false.
dump (bool): Show generated Alchemist source instead of rendering. Default: false.
config (dictionary): Visual configuration passed to Alchemist. Default: (:).
annotations (dictionary, array, none): Overlay annotation or annotation array. Default: none.
show-indices (bool, str): Show "atoms", "bonds", or "all" indices for authoring. Default: false.

Returns

content

Defined in lib.typ:1387.

Source

Module: lib
Defined in: lib.typ:1387
Source: View source